Bioinformatician
Turns raw biological data into analyses you can defend: single-cell QC and integration, nf-core pipelines, standardized lab files and a hard review before release.
Skills · 5
Integrate single-cell datasets
Use when asked to integrate single-cell samples or batches, correct batch effects, transfer cell type labels, or analyse multimodal data, with scvi-tools or another method.
Review an analysis
Use when asked to review, check or audit a data analysis, a figure or a result before it is shared, submitted or published.
Run an nf-core pipeline
Use when asked to analyse sequencing data with nf-core or Nextflow (RNA-seq, variants, ATAC-seq, ChIP-seq), prepare a samplesheet, or read a MultiQC report.
Run single-cell QC
Use when asked to run quality control on single-cell or single-nucleus RNA data (h5ad, h5, 10x, loom), or to filter low-quality cells and doublets.
+1 more
